STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_25190Transcription-repair coupling factor (Superfamily II helicase). (833 aa)    
Predicted Functional Partners:
Gasu_29140
RNA-binding protein.
   
 0.918
Gasu_22210
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.909
Gasu_43980
rRNA biogenesis protein rrp5.
   
 0.906
Gasu_27780
Uncharacterized protein.
   
 
 0.875
Gasu_57110
U3 ribonucleoprotein (Utp) family protein.
   
 0.875
Gasu_02760
FtsJ-like methyltransferase family protein.
   
 
  0.854
Gasu_03480
Helicase domain-containing protein.
   
 0.852
Gasu_23050
Uncharacterized protein.
   
 
 0.843
Gasu_03600
U3 snoRNP component Sof1p.
   
 0.833
Gasu_26820
U3 small nucleolar RNA-associated protein 7.
   
 
 0.818
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.