STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_19860RNA methyltransferase, TrmH family. (349 aa)    
Predicted Functional Partners:
Gasu_46370
39S ribosomal protein L47, mitochondrial.
   
 
 0.819
Gasu_11760
Uncharacterized protein.
   
 
 0.804
Gasu_19000
Mitochondrial ribosomal protein L21.
   
   0.751
Gasu_21020
Mitochondrial ribosomal protein L51/S25/CI-B8 family protein.
    
   0.727
Gasu_28140
Mitochondrial GTPase 1.
  
 
 0.709
Gasu_04210
tRNA pseudouridine synthase D.
   
   0.692
Gasu_39540
50S ribosomal protein L11 (Mitochondrial); Belongs to the universal ribosomal protein uL11 family.
   
 
 0.643
Gasu_44360
Ribosomal RNA large subunit methyltransferase E.
  
 
 0.635
Gasu_45970
Large subunit ribosomal protein L13 isoform 2.
  
 
 0.625
Gasu_08090
60S ribosomal protein L13A.
  
 
 0.625
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.