STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_03520RNA-metabolising metallo-beta-lactamase family protein. (370 aa)    
Predicted Functional Partners:
Gasu_29890
Cleavage and polyadenylation specificity factor subunit 2.
    
 
0.965
Gasu_18000
DNA-directed RNA polymerase II subunit I.
   
  0.895
Gasu_34130
DNA-directed RNA polymerase II subunit E.
   
  0.881
Gasu_04940
Uncharacterized protein.
    
 0.878
Gasu_11020
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
  0.852
Gasu_05520
Cleavage and polyadenylation specificity factor subunit-like protein.
   
 0.852
Gasu_47150
DNA-directed RNA Polymerase II subunit F.
   
  0.842
Gasu_58850
Tight junction plaque protein Symplekin-like protein.
   
 0.836
Gasu_40940
DNA-directed RNA polymerase II subunit C.
  
 0.833
Gasu_39630
Transcription elongation factor SPT5.
   
 0.819
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.