Gasu_60130 protein (Galdieria sulphuraria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Gasu_60130

JmjC domain-containing protein. (469 aa)

Predicted Functional Partners:

Gasu_36550

0.813

Gasu_15890

0.686

Gasu_61570

0.571

Gasu_59640

0.571

Gasu_11690

0.538

Gasu_20280

0.502

Gasu_45990

0.453

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_11690	Gasu_60130	M2W6S2	M2XRR1	Uncharacterized protein.	JmjC domain-containing protein.	0.538
Gasu_15890	Gasu_36550	M2X3T4	M2XFW6	Bromodomain-containing protein 3.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.901
Gasu_15890	Gasu_59640	M2X3T4	M2X9B3	Bromodomain-containing protein 3.	Histone H3; Belongs to the histone H3 family.	0.718
Gasu_15890	Gasu_60130	M2X3T4	M2XRR1	Bromodomain-containing protein 3.	JmjC domain-containing protein.	0.686
Gasu_15890	Gasu_61570	M2X3T4	M2VSS2	Bromodomain-containing protein 3.	Histone H3.	0.718
Gasu_20280	Gasu_60130	M2Y3K9	M2XRR1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	JmjC domain-containing protein.	0.502
Gasu_36550	Gasu_15890	M2XFW6	M2X3T4	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Bromodomain-containing protein 3.	0.901
Gasu_36550	Gasu_45990	M2XFW6	M2XWZ9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone demethylase JARID1.	0.743
Gasu_36550	Gasu_59640	M2XFW6	M2X9B3	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone H3; Belongs to the histone H3 family.	0.994
Gasu_36550	Gasu_60130	M2XFW6	M2XRR1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	JmjC domain-containing protein.	0.813
Gasu_36550	Gasu_61570	M2XFW6	M2VSS2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone H3.	0.990
Gasu_45990	Gasu_36550	M2XWZ9	M2XFW6	Histone demethylase JARID1.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.743
Gasu_45990	Gasu_59640	M2XWZ9	M2X9B3	Histone demethylase JARID1.	Histone H3; Belongs to the histone H3 family.	0.908
Gasu_45990	Gasu_60130	M2XWZ9	M2XRR1	Histone demethylase JARID1.	JmjC domain-containing protein.	0.453
Gasu_45990	Gasu_61570	M2XWZ9	M2VSS2	Histone demethylase JARID1.	Histone H3.	0.908
Gasu_59640	Gasu_15890	M2X9B3	M2X3T4	Histone H3; Belongs to the histone H3 family.	Bromodomain-containing protein 3.	0.718
Gasu_59640	Gasu_36550	M2X9B3	M2XFW6	Histone H3; Belongs to the histone H3 family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.994
Gasu_59640	Gasu_45990	M2X9B3	M2XWZ9	Histone H3; Belongs to the histone H3 family.	Histone demethylase JARID1.	0.908
Gasu_59640	Gasu_60130	M2X9B3	M2XRR1	Histone H3; Belongs to the histone H3 family.	JmjC domain-containing protein.	0.571
Gasu_60130	Gasu_11690	M2XRR1	M2W6S2	JmjC domain-containing protein.	Uncharacterized protein.	0.538