STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_58110U1 small nuclear ribonucleoprotein 70kDa. (259 aa)    
Predicted Functional Partners:
Gasu_07880
Small nuclear ribonucleoprotein G.
   
 0.998
Gasu_00100
Small nuclear ribonucleoprotein Sm D2.
   
 0.998
Gasu_41880
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.998
Gasu_25970
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.998
Gasu_32670
Small nuclear ribonucleoprotein Sm D3.
   
 0.997
Gasu_28640
Small nuclear ribonucleoprotein F isoform 1.
   
 0.997
Gasu_26890
U1 small nuclear ribonucleoprotein C.
   
 0.997
Gasu_60360
U2 small nuclear ribonucleoprotein A.
   
 
 0.996
Gasu_00410
WW domain-containing protein.
   
 
 0.996
Gasu_12670
Small nuclear ribonucleoprotein B and B.
    
 0.995
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.