STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_54980Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)    
Predicted Functional Partners:
Gasu_31280
E3 ubiquitin-protein ligase TRIP12.
   
 0.997
Gasu_56560
Ubiquitin-conjugating enzyme E2 variant.
   
 0.836
Gasu_10140
Ubiquitin.
   
 0.829
Gasu_42920
Ubiquitin-activating enzyme E1; Belongs to the ubiquitin-activating E1 family.
   
 0.815
Gasu_43290
E3 ubiquitin-protein ligase RFWD2.
    
 0.738
Gasu_53080
E3 SUMO-protein ligase RanBP2.
   
 0.719
Gasu_48170
RING-box protein 1.
    
 0.713
Gasu_08480
ATP-dependent RNA helicase-like protein.
    
 0.689
Gasu_49630
40S ribosomal protein S27Ae.
   
 0.689
Gasu_66020
Ubiquitin-like domain-containing protein.
   
 0.689
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.