STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_50650RNA-binding protein. (596 aa)    
Predicted Functional Partners:
Gasu_56460
Pre-mRNA-splicing factor CDC5/CEF1.
   
 
 0.986
Gasu_26460
Fatty acid 2-hydroxylase; Catalyzes stereospecific hydroxylation of free fatty acids at the C-2 position to produce (R)-2-hydroxy fatty acids, which are building blocks of sphingolipids and glycosphingolipids common in neural tissue and epidermis. Plays an essential role in the synthesis of galactosphingolipids of the myelin sheath. Responsible for the synthesis of sphingolipids and glycosphingolipids involved in the formation of epidermal lamellar bodies critical for skin permeability barrier. Participates in the synthesis of glycosphingolipids and a fraction of type II wax diesters i [...]
 
      0.835
Gasu_09310
Splicing factor PWI domain-containing protein.
   
 0.741
Gasu_00410
WW domain-containing protein.
   
 0.713
Gasu_20280
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
  
 
0.709
Gasu_02180
Serine/threonine kinase 23; Belongs to the protein kinase superfamily.
    
 
 0.700
Gasu_25790
Splicing factor-related protein.
   
 0.674
Gasu_60410
DNA binding / transcription factor.
   
  0.671
Gasu_15950
DNA damage-binding protein 1 isoform 2.
    
 
 0.647
Gasu_46380
Splicing factor 3B subunit 1.
   
 
 0.626
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.