Gasu_48880 protein (Galdieria sulphuraria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Gasu_48880

Cleavage stimulation factor subunit 3. (713 aa)

Predicted Functional Partners:

Gasu_29090

0.999

Gasu_20150

0.999

Gasu_58850

0.998

Gasu_04940

0.998

Gasu_05520

0.993

Gasu_14510

0.976

Gasu_03250

0.976

Gasu_53550

0.963

Gasu_29890

0.942

Gasu_56980

0.936

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_03250	Gasu_04940	M2Y8Z7	M2XQA7	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.920
Gasu_03250	Gasu_05520	M2Y8Z7	M2XPJ7	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cleavage and polyadenylation specificity factor subunit-like protein.	0.997
Gasu_03250	Gasu_14510	M2Y8Z7	M2Y5S2	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	WD_REPEATS_REGION domain-containing protein.	0.992
Gasu_03250	Gasu_20150	M2Y8Z7	M2XKX0	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	mRNA splicing factor, putative isoform 2.	0.959
Gasu_03250	Gasu_29090	M2Y8Z7	M2W1X7	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Fip1 domain-containing protein.	0.998
Gasu_03250	Gasu_29890	M2Y8Z7	M2XHI7	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cleavage and polyadenylation specificity factor subunit 2.	0.998
Gasu_03250	Gasu_48880	M2Y8Z7	M2XVY5	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cleavage stimulation factor subunit 3.	0.976
Gasu_03250	Gasu_53550	M2Y8Z7	M2WSZ8	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cleavage and polyadenylation specifity factor protein.	0.995
Gasu_03250	Gasu_56980	M2Y8Z7	M2X9Y8	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.843
Gasu_03250	Gasu_58850	M2Y8Z7	M2X9H3	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Tight junction plaque protein Symplekin-like protein.	0.996
Gasu_04940	Gasu_03250	M2XQA7	M2Y8Z7	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.920
Gasu_04940	Gasu_05520	M2XQA7	M2XPJ7	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit-like protein.	0.992
Gasu_04940	Gasu_14510	M2XQA7	M2Y5S2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.852
Gasu_04940	Gasu_20150	M2XQA7	M2XKX0	Uncharacterized protein.	mRNA splicing factor, putative isoform 2.	0.951
Gasu_04940	Gasu_29090	M2XQA7	M2W1X7	Uncharacterized protein.	Fip1 domain-containing protein.	0.948
Gasu_04940	Gasu_29890	M2XQA7	M2XHI7	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.995
Gasu_04940	Gasu_48880	M2XQA7	M2XVY5	Uncharacterized protein.	Cleavage stimulation factor subunit 3.	0.998
Gasu_04940	Gasu_53550	M2XQA7	M2WSZ8	Uncharacterized protein.	Cleavage and polyadenylation specifity factor protein.	0.994
Gasu_04940	Gasu_56980	M2XQA7	M2X9Y8	Uncharacterized protein.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.999
Gasu_04940	Gasu_58850	M2XQA7	M2X9H3	Uncharacterized protein.	Tight junction plaque protein Symplekin-like protein.	0.993