STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_42310Vacuolar protein sorting-associated protein VTA1. (304 aa)    
Predicted Functional Partners:
Gasu_32490
Charged multivesicular body protein 5.
   
 0.999
Gasu_30700
AAA-type ATPase; Belongs to the AAA ATPase family.
   
 0.999
Gasu_36450
Charged multivesicular body protein 1.
    
 0.985
Gasu_48790
Charged multivesicular body protein 1.
    
 0.985
Gasu_42080
Uncharacterized protein.
   
 
 0.977
Gasu_61150
GTP cyclohydrolase I.
   
   0.962
Gasu_29850
Pre-mRNA-splicing factor SPF27.
   
   0.960
Gasu_57890
Charged multivesicular body protein 6.
     
 0.789
Gasu_56720
Uncharacterized protein.
    
 0.758
Gasu_14730
DNA mismatch repair protein MLH3.
    
   0.755
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.