STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_40690[pt] tryptophan synthase alpha chain; Belongs to the TrpA family. (238 aa)    
Predicted Functional Partners:
Gasu_56660
Tryptophan synthase beta chain.
 0.999
Gasu_26000
Anthranilate synthase component II.
 
  
 0.999
Gasu_33750
Indole-3-glycerol phosphate synthase.
 
 0.999
Gasu_43930
Anthranilate phosphoribosyltransferase.
  
 0.997
Gasu_26990
Threonine dehydratase.
  
 
 0.937
Gasu_21070
Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.933
Gasu_25800
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
 
 
 
 0.932
Gasu_44560
Glycine/serine hydroxymethyltransferase.
 
 
 
 0.932
Gasu_21520
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
 
 
 
 0.932
Gasu_16620
Anthranilate synthase component I.
 
  
 0.925
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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