STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_27800(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase. (445 aa)    
Predicted Functional Partners:
Gasu_00190
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
  
 0.977
Gasu_18090
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
  
 0.958
Gasu_28410
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.
 
   
 0.764
Gasu_07290
Histidyl-tRNA synthetase.
  
  
 0.753
Gasu_34510
Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
  
  
 0.651
Gasu_29840
Triosephosphate isomerase.
  
  
 0.593
Gasu_42090
1-deoxy-D-xylulose-5-phosphate synthase.
 
  
 0.588
Gasu_37730
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
   
 0.566
Gasu_43430
Orotidine-5'-phosphate decarboxylase isoform 2.
     
 0.563
Gasu_49040
Isopentenyl-diphosphate delta-isomerase.
      
 0.560
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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