STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_27680D-aminoacyl-tRNA deacylase. (155 aa)    
Predicted Functional Partners:
Gasu_49020
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
      
 0.554
Gasu_42260
3R-hydroxymyristoyl ACP dehydrase isoform 2.
      
 0.554
Gasu_47910
Lipid-A-disaccharide synthase isoform 2.
     
 0.540
Gasu_19070
Glycyl-tRNA synthetase.
     
 0.532
Gasu_31990
Tyrosyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.518
Gasu_20480
Tyrosine--tRNA ligase.
     
 0.517
Gasu_41650
ATP-dependent RNA helicase.
      
 0.467
Gasu_40530
[pt] cytochrome f.
     
 0.450
Gasu_30690
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
      0.419
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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