Gasu_17290 protein (Galdieria sulphuraria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Gasu_17290

Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (167 aa)

Predicted Functional Partners:

Gasu_00730

0.972

Gasu_57150

0.969

Gasu_04860

0.969

Gasu_14310

0.967

Gasu_57480

0.962

Gasu_53520

0.958

Gasu_19000

0.957

Gasu_41160

0.954

Gasu_42050

0.951

Gasu_21960

0.948

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_00730	Gasu_17290	M2W9W9	M2Y536	[acyl-carrier-protein] S-malonyltransferase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.972
Gasu_00730	Gasu_19000	M2W9W9	M2XL65	[acyl-carrier-protein] S-malonyltransferase.	Mitochondrial ribosomal protein L21.	0.680
Gasu_04860	Gasu_14310	M2Y8L6	M2Y6J7	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	Uncharacterized protein.	0.999
Gasu_04860	Gasu_17290	M2Y8L6	M2Y536	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.969
Gasu_04860	Gasu_19000	M2Y8L6	M2XL65	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	Mitochondrial ribosomal protein L21.	0.583
Gasu_04860	Gasu_21960	M2Y8L6	M2Y3X4	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	NADH dehydrogenase (Ubiquinone) Fe-S protein 7; Belongs to the complex I 20 kDa subunit family.	0.999
Gasu_04860	Gasu_41160	M2Y8L6	M2XY98	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 6 isoform 1; Belongs to the complex I LYR family.	0.999
Gasu_04860	Gasu_42050	M2Y8L6	M2XEI5	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	NADH dehydrogenase (Ubiquinone) Fe-S protein 8.	0.999
Gasu_04860	Gasu_53520	M2Y8L6	M2XAU4	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 5.	0.999
Gasu_04860	Gasu_57150	M2Y8L6	M2XA08	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	NADH dehydrogenase.	0.999
Gasu_04860	Gasu_57480	M2Y8L6	M2X9T2	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	NADH dehydrogenase (Ubiquinone) Fe-S protein 3; Belongs to the complex I 30 kDa subunit family.	0.999
Gasu_14310	Gasu_04860	M2Y6J7	M2Y8L6	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 9; Belongs to the complex I LYR family.	0.999
Gasu_14310	Gasu_17290	M2Y6J7	M2Y536	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.967
Gasu_14310	Gasu_21960	M2Y6J7	M2Y3X4	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) Fe-S protein 7; Belongs to the complex I 20 kDa subunit family.	0.999
Gasu_14310	Gasu_41160	M2Y6J7	M2XY98	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 6 isoform 1; Belongs to the complex I LYR family.	0.999
Gasu_14310	Gasu_42050	M2Y6J7	M2XEI5	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) Fe-S protein 8.	0.999
Gasu_14310	Gasu_53520	M2Y6J7	M2XAU4	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 5.	0.999
Gasu_14310	Gasu_57150	M2Y6J7	M2XA08	Uncharacterized protein.	NADH dehydrogenase.	0.999
Gasu_14310	Gasu_57480	M2Y6J7	M2X9T2	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone) Fe-S protein 3; Belongs to the complex I 30 kDa subunit family.	0.999
Gasu_17290	Gasu_00730	M2Y536	M2W9W9	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	[acyl-carrier-protein] S-malonyltransferase.	0.972