STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_12840Carotenoid isomerase. (524 aa)    
Predicted Functional Partners:
Gasu_65550
Zeta-carotene desaturase.
  
  
 0.639
Gasu_00950
Farnesyl-diphosphate farnesyltransferase.
  
  
 0.618
Gasu_32640
Phytoene synthase.
  
  
 0.618
Gasu_61890
Phytoene synthase.
  
  
 0.592
Gasu_07190
Geranylgeranyl reductase.
 
  
 0.568
Gasu_31940
Zeta-carotene desaturase.
     
 0.562
Gasu_12900
Magnesium chelatase subunit H.
  
  
 0.551
Gasu_63150
Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.
  
  
 0.517
Gasu_30210
Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.448
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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