STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_10300Cyclin H; Belongs to the cyclin family. (391 aa)    
Predicted Functional Partners:
Gasu_50800
Transcription initiation factor TFIIH subunit H3 isoform 1.
   
 0.999
Gasu_42370
Cyclin-dependent serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 0.999
Gasu_32940
Transcription initiation factor TFIIE beta subunit.
    
 0.998
Gasu_31230
Transcription initiation factor TFIIE alpha subunit.
    
 0.998
Gasu_43640
Transcription initiation factor TFIIH subunit H1 isoform 1.
    
 0.996
Gasu_19890
DNA excision repair protein ERCC-3.
    
 0.995
Gasu_13450
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.992
Gasu_15380
General transcription factor IIH subunit.
   
 0.992
Gasu_26550
Transcription initiation factor TFIIB.
    
 0.950
Gasu_50950
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
   
 0.941
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.