Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gasu_04180 | Gasu_05780 | M2Y907 | M2Y8J1 | 3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family. | Long-chain acyl-CoA synthetase. | 0.888 |
Gasu_04630 | Gasu_05780 | M2Y8J8 | M2Y8J1 | Uncharacterized protein. | Long-chain acyl-CoA synthetase. | 0.653 |
Gasu_04630 | Gasu_25550 | M2Y8J8 | M2W3A7 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.935 |
Gasu_04630 | Gasu_32130 | M2Y8J8 | M2XH48 | Uncharacterized protein. | 60S ribosomal protein L9e. | 0.893 |
Gasu_04630 | Gasu_54740 | M2Y8J8 | M2VUP5 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.991 |
Gasu_05780 | Gasu_04180 | M2Y8J1 | M2Y907 | Long-chain acyl-CoA synthetase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family. | 0.888 |
Gasu_05780 | Gasu_04630 | M2Y8J1 | M2Y8J8 | Long-chain acyl-CoA synthetase. | Uncharacterized protein. | 0.653 |
Gasu_05780 | Gasu_21670 | M2Y8J1 | M2Y3U7 | Long-chain acyl-CoA synthetase. | Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. | 0.611 |
Gasu_05780 | Gasu_25550 | M2Y8J1 | M2W3A7 | Long-chain acyl-CoA synthetase. | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.600 |
Gasu_05780 | Gasu_32130 | M2Y8J1 | M2XH48 | Long-chain acyl-CoA synthetase. | 60S ribosomal protein L9e. | 0.633 |
Gasu_05780 | Gasu_50940 | M2Y8J1 | M2WTY9 | Long-chain acyl-CoA synthetase. | Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. | 0.611 |
Gasu_05780 | Gasu_53070 | M2Y8J1 | M2VV46 | Long-chain acyl-CoA synthetase. | Nucleocytoplasmic transporter. | 0.603 |
Gasu_05780 | Gasu_53080 | M2Y8J1 | M2XB10 | Long-chain acyl-CoA synthetase. | E3 SUMO-protein ligase RanBP2. | 0.645 |
Gasu_05780 | Gasu_54740 | M2Y8J1 | M2VUP5 | Long-chain acyl-CoA synthetase. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.643 |
Gasu_05780 | Gasu_59510 | M2Y8J1 | M2XSK9 | Long-chain acyl-CoA synthetase. | Acyl-CoA dehydrogenase, mitochondrial. | 0.602 |
Gasu_21670 | Gasu_05780 | M2Y3U7 | M2Y8J1 | Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. | Long-chain acyl-CoA synthetase. | 0.611 |
Gasu_21670 | Gasu_50940 | M2Y3U7 | M2WTY9 | Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. | Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. | 0.901 |
Gasu_21670 | Gasu_59510 | M2Y3U7 | M2XSK9 | Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. | Acyl-CoA dehydrogenase, mitochondrial. | 0.903 |
Gasu_25550 | Gasu_04630 | M2W3A7 | M2Y8J8 | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.935 |
Gasu_25550 | Gasu_05780 | M2W3A7 | M2Y8J1 | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Long-chain acyl-CoA synthetase. | 0.600 |
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