STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIJ05942.1Methanogenesis marker protein 17; COG4051. (188 aa)    
Predicted Functional Partners:
AIJ05941.1
Radical SAM domain protein; COG0535.
       0.885
AIJ05943.1
Methanogenesis marker protein 17; COG1924.
 
     0.842
AIJ05455.1
Methanogenesis marker protein 3; COG4070; Belongs to the UPF0288 family.
 
     0.799
AIJ06256.1
Hypothetical protein; COG4029.
 
     0.798
AIJ05940.1
Hypothetical protein; COG2029.
 
     0.761
AIJ05573.1
Transcriptional regulator, LysR family; COG0583.
  
     0.699
AIJ05343.1
Methyl coenzyme M reductase II protein MtrC; COG4052.
 
     0.689
AIJ05902.1
Methyl-coenzyme M reductase operon protein D; COG4055.
 
     0.682
AIJ06161.1
Hypothetical protein; COG4050.
 
     0.674
AIJ05333.1
Methyl coenzyme M reductase system, component A2; COG1123.
 
     0.662
Your Current Organism:
Methanocaldococcus bathoardescens
NCBI taxonomy Id: 1301915
Other names: DSM 27223, KACC 18232, M. bathoardescens, Methanocaldococcus bathoardescens Stewart et al. 2015, Methanocaldococcus sp. JH146, strain JH146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.