STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metC_2Unannotated protein. (384 aa)    
Predicted Functional Partners:
metA
Unannotated protein; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
  
 
 0.952
GCA_001313225_03207
Unannotated protein.
 
 0.921
cysK
Unannotated protein.
 
 0.920
metC_3
Unannotated protein.
 
  
 
0.885
metF
Unannotated protein; Belongs to the methylenetetrahydrofolate reductase family.
  
 0.882
metE
Unannotated protein; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
  
 
 0.874
thrA
Unannotated protein.
  
 
 0.865
metY
Unannotated protein.
 
 
0.853
patB_1
Unannotated protein.
 
 
 0.843
GCA_001313225_00165
Unannotated protein.
 
 
0.840
Your Current Organism:
Lactobacillus silagei
NCBI taxonomy Id: 1302250
Other names: L. silagei JCM 19001, Lactobacillus silagei IWT126, Lactobacillus silagei JCM 19001, Lactobacillus sp. IWT126, Lactobacillus sp. JCM 19001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.