STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompR_5Unannotated protein. (235 aa)    
Predicted Functional Partners:
IWT126_01509
Unannotated protein.
 0.981
IWT126_00347
Unannotated protein.
 
 0.945
IWT126_01238
Unannotated protein.
 0.933
GCA_001313225_00756
Unannotated protein.
 
 0.907
IWT126_01042
Unannotated protein.
 0.903
GCA_001313225_01735
Unannotated protein.
  
 0.861
IWT126_00448
Unannotated protein.
 0.844
vicK
Unannotated protein.
 0.816
GCA_001313225_00757
Unannotated protein.
 
 0.815
GCA_001313225_01737
Unannotated protein.
  
 0.811
Your Current Organism:
Lactobacillus silagei
NCBI taxonomy Id: 1302250
Other names: L. silagei JCM 19001, Lactobacillus silagei IWT126, Lactobacillus silagei JCM 19001, Lactobacillus sp. IWT126, Lactobacillus sp. JCM 19001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.