STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK47366.1Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (541 aa)    
Predicted Functional Partners:
KRK47367.1
Na+ xyloside symporter related transporter.
 
    0.919
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.893
KRK47368.1
AraC family transcriptional regulator.
 
  
  0.783
uxaC
Glucuronate isomerase.
    
 0.775
uxaC-2
Glucuronate isomerase.
    
 0.775
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.759
KRK48304.1
O-glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.718
KRK47644.1
N-acetylmuramoyl-L-alanine amidase.
  
 
  0.566
KRK48210.1
Hypothetical protein.
   
 
 0.519
KRK48322.1
Glycosyl hydrolase family protein.
  
 
 0.514
Your Current Organism:
Lactobacillus kimchicus
NCBI taxonomy Id: 1302272
Other names: L. kimchicus JCM 15530, Lactobacillus kimchicus DCY51, Lactobacillus kimchicus JCM 15530, Lactobacillus sp. DCY51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.