STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF02406.1Xaa-Pro aminopeptidase. (589 aa)    
Predicted Functional Partners:
SHF23115.1
Shikimate dehydrogenase.
 
  
  0.575
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.571
SHF38454.1
Dipeptidase D.
  
 
 0.561
SHE35366.1
Zinc carboxypeptidase.
    
 0.544
SHE40325.1
Hypothetical protein.
  
 0.520
SHE35549.1
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
    
  0.519
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
  0.512
SHE89461.1
Hypothetical protein.
     
 0.497
SHF02378.1
Transcriptional regulator, HxlR family.
       0.491
SHF40534.1
Glycine/D-amino acid oxidase.
  
 
 0.491
Your Current Organism:
Chryseobacterium takakiae
NCBI taxonomy Id: 1302685
Other names: CGMCC 1.12488, Chryseobacterium sp. AG1-2, Chryseobacterium takakiae Zhao et al. 2015, DSM 26898, strain AG1-2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.