STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK12577.1Signal transduction histidine kinase. (428 aa)    
Predicted Functional Partners:
SHL06136.1
PAS domain S-box-containing protein.
 
0.999
SHL06176.1
Signal transduction histidine kinase.
 
0.999
SHL12888.1
Signal transduction histidine kinase.
  
 0.999
SHK12538.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.971
SHK57361.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.877
SHL16343.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.876
SHL40578.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.874
SHK72719.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
    
 0.813
SHL63359.1
2-oxoisovalerate dehydrogenase E1 component.
    
 0.813
SHL06348.1
Response regulator receiver domain-containing protein.
 
 
 0.797
Your Current Organism:
Chryseobacterium polytrichastri
NCBI taxonomy Id: 1302687
Other names: C. polytrichastri, CGMCC 1.12491, Chryseobacterium polytrichastri Chen et al. 2015, Chryseobacterium sp. YG4-6, DSM 26899, strain YG4-6
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