STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK23701.1NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains. (270 aa)    
Predicted Functional Partners:
SHL00104.1
Colicin V processing peptidase. Cysteine peptidase. MEROPS family C39 /alpha-hemolysin translocation ATP-binding protein HlyB.
   
  0.829
SHL81332.1
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39.
   
  0.829
SHL97747.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
   
  0.829
SHM45913.1
ATP-binding cassette, subfamily B.
   
  0.829
SHM08095.1
Putative hemin transport protein.
 
    0.650
SHK23659.1
Iron complex outermembrane recepter protein.
 
     0.573
SHM07906.1
Iron complex transport system substrate-binding protein.
 
    0.520
SHL62873.1
ZIP Zinc transporter.
   
    0.518
SHM08003.1
Iron complex transport system ATP-binding protein.
 
  
 0.458
SHK12720.1
Transcriptional regulator, AraC family.
  
     0.438
Your Current Organism:
Chryseobacterium polytrichastri
NCBI taxonomy Id: 1302687
Other names: C. polytrichastri, CGMCC 1.12491, Chryseobacterium polytrichastri Chen et al. 2015, Chryseobacterium sp. YG4-6, DSM 26899, strain YG4-6
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