STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI5-dehydro-4-deoxy-D-glucuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (276 aa)    
Predicted Functional Partners:
OLY94761.1
Catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  0.945
OLY93491.1
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
  0.791
uxaC
Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.734
OLY92118.1
Glucuronyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.726
OLY92119.1
Altronate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.687
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.641
OLY94762.1
SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
OLY92112.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.635
OLY92120.1
Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.518
OLY92113.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.491
Your Current Organism:
Cnuella takakiae
NCBI taxonomy Id: 1302690
Other names: Bacteroidetes bacterium RG1-1, C. takakiae, CGMCC 1.12492, Cnuella takakiae Zhao et al. 2014, DSM 26897, strain RG1-1
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