STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ48954.1PFAM: HlyD family secretion protein; TIGRFAM: ABC exporter membrane fusion protein, DevB family. (392 aa)    
Predicted Functional Partners:
AFZ48955.1
DevC protein; PFAM: Predicted permease; TIGRFAM: DevC protein.
 
  
 0.899
AFZ49875.1
DevC protein; PFAM: Predicted permease; TIGRFAM: DevC protein.
 
  
 0.842
AFZ49841.1
Type I secretion system ABC transporter, HlyB family; PFAM: ABC transporter; ABC transporter transmembrane region; Cyclic nucleotide-binding domain; TIGRFAM: type I secretion system ABC transporter, HlyB family.
 
 
 0.731
AFZ49289.1
PFAM: Outer membrane efflux protein.
  
 
 0.700
AFZ48956.1
PFAM: ABC transporter; TIGRFAM: ABC exporter ATP-binding subunit, DevA family.
 
 
 0.689
AFZ50161.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
  
  
 0.647
AFZ49451.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease; TIGRFAM: DevC protein.
 
  
 0.572
AFZ48953.1
Cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme.
       0.524
AFZ49877.1
PFAM: Bacterial regulatory proteins, tetR family.
 
   
 0.508
AFZ49715.1
PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.504
Your Current Organism:
Dactylococcopsis salina
NCBI taxonomy Id: 13035
Other names: D. salina PCC 8305, Dactylococcopsis salina PCC 8305, Dactylococcopsis sp. PCC 8305, Myxobactron salinum PCC 8305
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.