STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ49577.1PFAM: Fatty acid desaturase. (270 aa)    
Predicted Functional Partners:
AFZ49576.1
Cystathionine beta-lyase family protein involved in aluminum resistance; PFAM: Aluminium resistance protein.
       0.586
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.543
AFZ50506.1
PFAM: Fatty acid desaturase.
 
 
 
 0.537
AFZ50234.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Fatty acid hydroxylase superfamily.
   
 
 0.465
AFZ51978.1
Amino acid adenylation enzyme/thioester reductase family protein; PFAM: Thioesterase domain; Phosphopantetheine attachment site; Methyltransferase domain; AMP-binding enzyme; Condensation domain; TIGRFAM: amino acid adenylation domain.
 
   
 0.459
AFZ50155.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
  
     0.436
Your Current Organism:
Dactylococcopsis salina
NCBI taxonomy Id: 13035
Other names: D. salina PCC 8305, Dactylococcopsis salina PCC 8305, Dactylococcopsis sp. PCC 8305, Myxobactron salinum PCC 8305
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.