STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ50979.1Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (78 aa)    
Predicted Functional Partners:
AFZ49319.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit.
  
     0.752
AFZ49318.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit.
  
     0.751
cpcS-3
CpeS-like protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.751
AFZ50329.1
PFAM: Domain of unknown function (DUF1815).
  
     0.732
AFZ49346.1
Allophycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit.
  
     0.705
AFZ48840.1
Hypothetical protein.
  
     0.696
AFZ51568.1
Allophycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit.
  
     0.695
AFZ52079.1
PFAM: Protein of unknown function (DUF3153).
  
     0.694
AFZ51037.1
Hypothetical protein.
  
 
   0.691
AFZ49545.1
PFAM: Phycobilisome Linker polypeptide; Belongs to the phycobilisome linker protein family.
  
     0.688
Your Current Organism:
Dactylococcopsis salina
NCBI taxonomy Id: 13035
Other names: D. salina PCC 8305, Dactylococcopsis salina PCC 8305, Dactylococcopsis sp. PCC 8305, Myxobactron salinum PCC 8305
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.