STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAS68151.1Conserved hypothetical protein. (690 aa)    
Predicted Functional Partners:
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 0.982
BAS68152.1
Conserved hypothetical protein.
 
  
 0.965
BAS68150.1
Conserved hypothetical protein.
       0.773
glcF
Glycolate oxidase iron-sulfur subunit.
       0.727
BAS68160.1
Peptidylprolyl isomerase.
    
  0.572
ppiB
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.572
bioF
8-amino-7-oxononanoate synthase.
   
    0.550
dbpA
ATP-independent RNA helicase DbpA; Belongs to the DEAD box helicase family.
    
 0.531
deaD
ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
    
 0.531
rhlE
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 0.531
Your Current Organism:
endosymbiont of Bathymodiolus
NCBI taxonomy Id: 1303921
Other names: e. of Bathymodiolus septemdierum str. Myojin knoll, endosymbiont of Bathymodiolus septemdierum str. Myojin knoll
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