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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DefAPeptide deformylase; KEGG: stf:Ssal_01766 2.0e-66 def; polypeptide deformylase; K01462 peptide deformylase. (136 aa)    
Predicted Functional Partners:
Tig
Trigger factor; KEGG: sgg:SGGBAA2069_c02840 2.3e-193 tig; trigger factor K03545; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.810
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.808
rpsU
Ribosomal protein S21; KEGG: sew:SeSA_A3399 6.2e-10 rpsU; 30S ribosomal protein S21 K02970; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.802
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.799
rpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00016 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL28 family.
  
   0.783
rpsP
Ribosomal protein S16; KEGG: apb:SAR116_1817 1.8e-19 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bS16 family.
  
   0.783
rpmA
Ribosomal protein L27; KEGG: pfe:PSF113_5049 6.8e-20 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL27 family.
  
   0.781
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.780
RplI
Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97.
  
   0.779
rpsB
Ribosomal protein S2; KEGG: apb:SAR116_0519 9.7e-60 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.
  
   0.779
Your Current Organism:
Streptococcus salivarius
NCBI taxonomy Id: 1304
Other names: ATCC 7073, CCUG 11878, CCUG 17825, CCUG 50207, CIP 102503, DSM 20560, JCM 5707, LMG 11489, LMG:11489, NCIMB 701779, NCTC 8618, S. salivarius, Streptococcus salivarius subsp. salivarius, Streptococcus sp. FStet12, Streptococcus sp. HSISS4
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