STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RecDHelicase, RecD/TraA family; KEGG: ssr:SALIVB_1902 0. recD; putative exodeoxyribonuclease V K03581; Psort location: Cytoplasmic, score: 9.97. (834 aa)    
Predicted Functional Partners:
KXU59027.1
KEGG: stj:SALIVA_1772 0. addA; ATP-dependent nuclease subunit A (ATP-dependent helicase addA); Psort location: Cytoplasmic, score: 9.97.
  
 0.972
DnaN
KEGG: ssr:SALIVB_0002 1.2e-185 dnaN; beta subunit of DNA polymerase III; K02338 DNA polymerase III subunit beta; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.846
DnaG
DNA primase; KEGG: stf:Ssal_00588 0. dnaG; DNA primase; K02316 DNA primase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.844
KXU59584.1
KEGG: ssr:SALIVB_0259 0. Snf2 family protein; Psort location: Cytoplasmic, score: 8.96.
  
 0.797
pcrA
KEGG: stf:Ssal_01088 0. uvrD; ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.741
RnhB2
Ribonuclease HIII; KEGG: stj:SALIVA_1835 6.6e-148 rnhC; ribonuclease HIII (RNase HIII).
 
   
 0.726
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 
 0.699
KXU57534.1
DnaJ domain protein.
   
 0.675
SipA
Signal peptidase I; KEGG: stj:SALIVA_1836 5.1e-109 sipA; signal peptidase I; Psort location: CytoplasmicMembrane, score: 10.00.
       0.641
KXU58436.1
KEGG: stf:Ssal_00957 0. dinG; DnaQ family exonuclease/DinG family helicase; K03722 ATP-dependent DNA helicase DinG; Psort location: Cytoplasmic, score: 9.97.
  
 0.590
Your Current Organism:
Streptococcus salivarius
NCBI taxonomy Id: 1304
Other names: ATCC 7073, CCUG 11878, CCUG 17825, CCUG 50207, CIP 102503, DSM 20560, JCM 5707, LMG 11489, LMG:11489, NCIMB 701779, NCTC 8618, S. salivarius, Streptococcus salivarius subsp. salivarius, Streptococcus sp. FStet12, Streptococcus sp. HSISS4
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