STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjRibonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (560 aa)    
Predicted Functional Partners:
rnj-2
Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
  
  
 
0.910
KXU58973.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96; Belongs to the UPF0356 family.
  
    0.857
KXU59320.1
YmdA/YtgF family protein; KEGG: sgg:SGGBAA2069_c04230 5.8e-236 2,3-cyclic-nucleotide 2'phosphodiesterase K06950; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.620
KXU56071.1
KEGG: stf:Ssal_01290 1.0e-135 ggpS; geranyltranstransferase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97.
  
    0.579
KXU58972.1
Universal bacterial protein YeaZ; KEGG: ssr:SALIVB_1907 1.9e-109 glycoprotein endopeptidase; Psort location: Cytoplasmic, score: 8.96.
       0.565
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
  
 0.550
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.527
RimI
KEGG: stf:Ssal_00241 3.9e-63 rimI; ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase; Psort location: Cytoplasmic, score: 9.26.
       0.527
KXU58968.1
Branched-chain amino acid transport protein; KEGG: sfr:Sfri_2988 0.0022 undecaprenyl pyrophosphate phosphatase K06153; Psort location: CytoplasmicMembrane, score: 9.82.
       0.457
KXU58969.1
Putative azaleucine resistance protein AzlC; KEGG: apb:SAR116_0734 2.1e-16 AzlC-like protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.457
Your Current Organism:
Streptococcus salivarius
NCBI taxonomy Id: 1304
Other names: ATCC 7073, CCUG 11878, CCUG 17825, CCUG 50207, CIP 102503, DSM 20560, JCM 5707, LMG 11489, LMG:11489, NCIMB 701779, NCTC 8618, S. salivarius, Streptococcus salivarius subsp. salivarius, Streptococcus sp. FStet12, Streptococcus sp. HSISS4
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