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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrnCRNase3 domain protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (140 aa)    
Predicted Functional Partners:
cysS
cysteine--tRNA ligase; KEGG: stf:Ssal_02087 6.8e-233 cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.959
KXU58850.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.898
TrmH
RNA methyltransferase, TrmH family, group 3; KEGG: stj:SALIVA_0109 2.5e-125 trmH; putative trmH family tRNA/rRNA methyltransferase yacO; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
  
 0.839
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.781
KXU58846.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
KXU57706.1
S4 domain protein; KEGG: mge:MG_209 0.0061 RluA family pseudouridine synthase K06180; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.749
cysE
KEGG: stf:Ssal_02089 5.9e-108 cysE; serine acetyltransferase; K00640 serine O-acetyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.741
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.697
rpmG
Ribosomal protein L33; KEGG: apb:SAR116_0619 1.4e-05 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.661
Fbp
Fibronectin-binding domain protein; KEGG: edi:EDI_341030 0.0081 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
 
     0.657
Your Current Organism:
Streptococcus salivarius
NCBI taxonomy Id: 1304
Other names: ATCC 7073, CCUG 11878, CCUG 17825, CCUG 50207, CIP 102503, DSM 20560, JCM 5707, LMG 11489, LMG:11489, NCIMB 701779, NCTC 8618, S. salivarius, Streptococcus salivarius subsp. salivarius, Streptococcus sp. FStet12, Streptococcus sp. HSISS4
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