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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXU58705.1Integrase core domain protein; KEGG: efc:EFAU004_00210 1.7e-39 ISEnfa3, transposase; Psort location: Cytoplasmic, score: 8.96. (274 aa)    
Predicted Functional Partners:
KXU58247.1
Hypothetical protein; KEGG: efc:EFAU004_01904 2.3e-07 ISEnfa3, transposase.
  
     0.759
KXU58878.1
Transposase; KEGG: efc:EFAU004_01409 8.8e-11 ISEnfa3, transposase; Psort location: Cytoplasmic, score: 8.96.
  
 0.749
KXU58704.1
ISSag7, transposase OrfA.
       0.737
KXU58245.1
Transposase; KEGG: efc:EFAU004_00019 4.1e-08 ISEnfa3, transposase; Psort location: Cytoplasmic, score: 8.96.
  
 0.718
KXU58706.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.628
KXU58703.1
ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.483
PotA2
KEGG: stj:SALIVA_1316 7.7e-99 Nod factor export ATP-binding protein I (nodulation ATP-binding protein I); Psort location: Cytoplasmic, score: 9.12.
       0.411
Your Current Organism:
Streptococcus salivarius
NCBI taxonomy Id: 1304
Other names: ATCC 7073, CCUG 11878, CCUG 17825, CCUG 50207, CIP 102503, DSM 20560, JCM 5707, LMG 11489, LMG:11489, NCIMB 701779, NCTC 8618, S. salivarius, Streptococcus salivarius subsp. salivarius, Streptococcus sp. FStet12, Streptococcus sp. HSISS4
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