| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RplI | prfC | HMPREF3219_0200226 | HMPREF3219_0201638 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.846 |
| RplI | rplC | HMPREF3219_0200226 | HMPREF3219_0200341 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.995 |
| RplI | rplK | HMPREF3219_0200226 | HMPREF3219_0200878 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.997 |
| RplI | rplL | HMPREF3219_0200226 | HMPREF3219_0201054 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.997 |
| RplI | rplQ | HMPREF3219_0200226 | HMPREF3219_0200314 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L17; KEGG: apb:SAR116_2416 1.1e-21 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.97. | 0.996 |
| RplI | rplS | HMPREF3219_0200226 | HMPREF3219_0202107 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.995 |
| RplI | rplT | HMPREF3219_0200226 | HMPREF3219_0201879 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.996 |
| RplI | rplU | HMPREF3219_0200226 | HMPREF3219_0200276 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.996 |
| RplI | rpmA | HMPREF3219_0200226 | HMPREF3219_0200275 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L27; KEGG: pfe:PSF113_5049 6.8e-20 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL27 family. | 0.996 |
| RplI | rpmG | HMPREF3219_0200226 | HMPREF3219_0201315 | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | Ribosomal protein L33; KEGG: apb:SAR116_0619 1.4e-05 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL33 family. | 0.992 |
| prfC | RplI | HMPREF3219_0201638 | HMPREF3219_0200226 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L9; KEGG: apb:SAR116_0644 4.2e-11 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97. | 0.846 |
| prfC | rplC | HMPREF3219_0201638 | HMPREF3219_0200341 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.842 |
| prfC | rplK | HMPREF3219_0201638 | HMPREF3219_0200878 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.840 |
| prfC | rplL | HMPREF3219_0201638 | HMPREF3219_0201054 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.889 |
| prfC | rplQ | HMPREF3219_0201638 | HMPREF3219_0200314 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L17; KEGG: apb:SAR116_2416 1.1e-21 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.97. | 0.842 |
| prfC | rplS | HMPREF3219_0201638 | HMPREF3219_0202107 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.866 |
| prfC | rplT | HMPREF3219_0201638 | HMPREF3219_0201879 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.873 |
| prfC | rplU | HMPREF3219_0201638 | HMPREF3219_0200276 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.840 |
| prfC | rpmA | HMPREF3219_0201638 | HMPREF3219_0200275 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L27; KEGG: pfe:PSF113_5049 6.8e-20 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL27 family. | 0.884 |
| prfC | rpmG | HMPREF3219_0201638 | HMPREF3219_0201315 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L33; KEGG: apb:SAR116_0619 1.4e-05 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL33 family. | 0.852 |
STRING v12.5 is now available!
