STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pthaminoacyl-tRNA hydrolase; KEGG: stj:SALIVA_0005 1.5e-77 pth; peptidyl-tRNA hydrolase (PTH); Psort location: Cytoplasmic, score: 9.26. (158 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
 
  
 0.881
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
 
   
 0.587
TrcF
KEGG: stf:Ssal_02161 0. mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase); Psort location: Cytoplasmic, score: 9.97.
  
  
 0.584
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
 
  
 0.583
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.563
KXU57762.1
KEGG: ssr:SALIVB_0011 1.0e-199 tilS; tRNA(Ile)-lysidine synthase K04075; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.550
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.534
PriA
Primosomal protein; KEGG: stf:Ssal_00638 0. priA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase); Psort location: Cytoplasmic, score: 8.96.
  
    0.501
PheT
KEGG: stf:Ssal_00892 0. pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97.
     
 0.500
KXU58604.1
protein-(glutamine-N5) methyltransferase; KEGG: ssr:SALIVB_0837 5.9e-124 hemK; putative protoporphyrinogen oxidase K02493; Psort location: Cytoplasmic, score: 9.97.
 
    0.493
Your Current Organism:
Streptococcus salivarius
NCBI taxonomy Id: 1304
Other names: ATCC 7073, CCUG 11878, CCUG 17825, CCUG 50207, CIP 102503, DSM 20560, JCM 5707, LMG 11489, LMG:11489, NCIMB 701779, NCTC 8618, S. salivarius, Streptococcus salivarius subsp. salivarius, Streptococcus sp. FStet12, Streptococcus sp. HSISS4
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