STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMQ70268.1Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)    
Predicted Functional Partners:
KMQ72637.1
M28 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.579
KMQ70269.1
Glutamine cyclotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
KMQ70945.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.471
KMQ70267.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.470
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.468
KMQ70565.1
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.433
KMQ72472.1
Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.407
KMQ71643.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.405
Your Current Organism:
Chryseobacterium koreense
NCBI taxonomy Id: 1304281
Other names: C. koreense CCUG 49689, Chryseobacterium koreense CCUG 49689
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