STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EOD01782.1Ribose operon repressor. (339 aa)    
Predicted Functional Partners:
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 0.939
EOD01778.1
Ribose ABC transport system, permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.825
EOD01497.1
PTS system, glucose-specific component IIC / IIB.
    
 0.825
EOD01156.1
PTS system, glucose-specific component IIC / IIB.
    
 0.825
EOD00147.1
PTS system, sucrose-specific component IIB / IIC.
    
 0.825
rbsA
Ribose ABC transport system, ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 
 0.824
rbsD
Ribose ABC transport system, high affinity permease RbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.761
EOD01777.1
Ribose ABC transport system, periplasmic ribose-binding protein RbsB.
 
 
0.732
EOD00853.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.674
EOD00859.1
Catabolite repression HPr-like protein Crh.
   
 
 0.628
Your Current Organism:
Caldisalinibacter kiritimatiensis
NCBI taxonomy Id: 1304284
Other names: C. kiritimatiensis, Caldisalinibacter kiritimatiensis Ben Hania et al. 2015, Clostridiaceae bacterium L21-TH-D2, DSM 26826, JCM 18664, strain L21-TH-D2
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