STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EOD00796.1Peptidoglycan-binding LysM. (474 aa)    
Predicted Functional Partners:
EOC99716.1
Flagellar motor switch protein FliN.
   
   0.773
EOD01518.1
Multimodular transpeptidase-transglycosylase.
  
   
 0.584
EOD00284.1
Putative cell wall-binding protein.
 
  
 0.530
EOC99819.1
Membrane protein; Related to metalloendopeptidase.
 
     0.513
EOC99505.1
Spore cortex-lytic enzyme, lytic transglycosylase SleB.
  
 
 0.451
EOC99550.1
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.445
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.440
EOD00797.1
Hypothetical protein.
       0.437
EOD00672.1
Sporulation protein SpoIID.
 
   
 0.433
EOD01699.1
Hypothetical protein.
  
  
 0.410
Your Current Organism:
Caldisalinibacter kiritimatiensis
NCBI taxonomy Id: 1304284
Other names: C. kiritimatiensis, Caldisalinibacter kiritimatiensis Ben Hania et al. 2015, Clostridiaceae bacterium L21-TH-D2, DSM 26826, JCM 18664, strain L21-TH-D2
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