STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EOD00680.1ubiE/COQ5 methyltransferase. (223 aa)    
Predicted Functional Partners:
EOD00679.1
Hypothetical protein.
       0.782
EOD00681.1
Hydroxymethylpyrimidine ABC transporter, ATPase component.
 
    0.761
EOD00117.1
NAD-reducing hydrogenase subunit HoxF.
    
 0.726
EOC99418.1
NAD-reducing hydrogenase subunit HoxF.
    
 0.726
EOD00684.1
Hypothetical protein.
 
     0.645
EOD00682.1
Hydroxymethylpyrimidine ABC transporter, substrate-binding component.
       0.607
EOD00683.1
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
  
    0.592
EOC99250.1
Alcohol dehydrogenase, Acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.513
birA
Biotin-protein ligase/ Biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.489
EOD00549.1
[FeFe]-hydrogenase maturation protein HydE.
  
 
 0.482
Your Current Organism:
Caldisalinibacter kiritimatiensis
NCBI taxonomy Id: 1304284
Other names: C. kiritimatiensis, Caldisalinibacter kiritimatiensis Ben Hania et al. 2015, Clostridiaceae bacterium L21-TH-D2, DSM 26826, JCM 18664, strain L21-TH-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.