STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EOD00051.1Periplasmic [Fe] hydrogenase. (883 aa)    
Predicted Functional Partners:
EOD00118.1
NADH-quinone oxidoreductase, E subunit.
   
 0.997
EOD00117.1
NAD-reducing hydrogenase subunit HoxF.
   
 0.983
EOC99418.1
NAD-reducing hydrogenase subunit HoxF.
   
 0.983
EOC99268.1
Multi-sensor hybrid histidine kinase.
   
 0.874
EOC99612.1
RNA polymerase sigma-54 factor RpoN.
 
  
 0.868
EOD00853.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.833
EOD00573.1
Sensory box protein.
    
 0.832
EOD00049.1
NADH:ubiquinone oxidoreductase 24 kD subunit.
   
 0.827
EOC99267.1
Two-component hybrid sensor and regulator.
    
 0.802
EOD00050.1
Hypothetical protein.
 
 
 0.800
Your Current Organism:
Caldisalinibacter kiritimatiensis
NCBI taxonomy Id: 1304284
Other names: C. kiritimatiensis, Caldisalinibacter kiritimatiensis Ben Hania et al. 2015, Clostridiaceae bacterium L21-TH-D2, DSM 26826, JCM 18664, strain L21-TH-D2
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