STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EOC99783.1Spore germination protein GerKA. (528 aa)    
Predicted Functional Partners:
EOC99782.1
Spore germination protein.
 
  
 0.959
EOC99781.1
Spore germination B3, GerAC.
  
 0.952
EOD01684.1
Spore germination B3.
  
 0.877
EOC99784.1
Spore protease GPR related protein.
 
     0.835
EOD01685.1
Spore germination protein.
 
  
 0.823
EOD01514.1
Stage V sporulation protein AD (SpoVAD).
  
  
 0.792
EOD01513.1
Stage V sporulation protein AC (SpoVAC).
  
  
 0.784
gpr
Endopeptidase spore protease Gpr; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.781
EOD01515.1
Stage V sporulation protein AE (SpoVAE).
  
  
 0.779
EOD01683.1
Stage II sporulation protein required for processing of pro-sigma-E (SpoIIR).
 
     0.778
Your Current Organism:
Caldisalinibacter kiritimatiensis
NCBI taxonomy Id: 1304284
Other names: C. kiritimatiensis, Caldisalinibacter kiritimatiensis Ben Hania et al. 2015, Clostridiaceae bacterium L21-TH-D2, DSM 26826, JCM 18664, strain L21-TH-D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.