STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000526995_00918Unannotated protein. (211 aa)    
Predicted Functional Partners:
GCA_000526995_00882
Unannotated protein.
 
 0.999
GCA_000526995_00891
Unannotated protein.
 
 0.999
rpsK
Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
 0.999
GCA_000526995_00893
Unannotated protein.
 
 
 0.999
infA
Unannotated protein; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
 
 
 0.999
GCA_000526995_00895
Unannotated protein.
  
 0.999
GCA_000526995_00899
Unannotated protein.
 
 0.999
GCA_000526995_00900
Unannotated protein.
  
 0.999
GCA_000526995_00901
Unannotated protein.
 
 0.999
GCA_000526995_00902
Unannotated protein.
 
 0.999
Your Current Organism:
Clostridium indolis
NCBI taxonomy Id: 1304881
Other names: Clostridium indolis DSM 755, [. indolis DSM 755, [Clostridium] indolis DSM 755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.