STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF02708.1ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain. (557 aa)    
Predicted Functional Partners:
SMF62281.1
Membrane fusion protein, adhesin transport system.
  
 0.943
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
0.916
SMF54837.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
 
0.902
SMF62449.1
Outer membrane protein.
  
 
 0.774
SMF17443.1
HlyD family secretion protein.
  
 0.754
SMF18100.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
  
 0.754
SMF27075.1
Multidrug resistance efflux pump.
  
 0.754
SMF29030.1
Multidrug resistance efflux pump.
  
 0.754
SMF43995.1
HlyD family secretion protein.
  
 0.754
SMF51179.1
RND family efflux transporter, MFP subunit.
  
 0.754
Your Current Organism:
Alteromonadaceae bacterium Bs31
NCBI taxonomy Id: 1304903
Other names: A. bacterium Bs31
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