STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF34571.1MSHA biogenesis protein MshK. (104 aa)    
Predicted Functional Partners:
SMF34529.1
MSHA biogenesis protein MshI.
       0.773
SMF34554.1
Hypothetical protein.
       0.773
SMF34560.1
MSHA biogenesis protein MshJ.
       0.773
SMF34587.1
MSHA biogenesis protein MshL.
       0.773
SMF34609.1
MSHA biogenesis protein MshM.
       0.737
SMF34612.1
Hypothetical protein.
       0.737
SMF34618.1
MSHA biogenesis protein MshE.
       0.737
SMF34626.1
MSHA biogenesis protein MshG.
       0.731
trmL
tRNA (cytidine/uridine-2'-O-)-methyltransferase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
       0.531
SMF34629.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.491
Your Current Organism:
Alteromonadaceae bacterium Bs31
NCBI taxonomy Id: 1304903
Other names: A. bacterium Bs31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.