STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF35317.1Membrane protein DedA, SNARE-associated domain. (194 aa)    
Predicted Functional Partners:
SMF35331.1
Hypothetical protein.
 
   
 0.949
SMF35339.1
DoxX-like family protein.
 
     0.872
SMF63016.1
Hypothetical protein.
  
     0.726
SMF15447.1
Protein of unknown function.
  
     0.716
SMF30429.1
Glycerol-3-phosphate dehydrogenase.
  
  
  0.705
SMF63044.1
Uncharacterized protein conserved in bacteria.
 
     0.700
SMF60813.1
Type I secretion C-terminal target domain (VC_A0849 subclass).
  
   
 0.695
SMF63066.1
Hypothetical protein.
  
     0.683
SMF36239.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.672
SMF53879.1
Succinate dehydrogenase subunit C.
  
  
  0.670
Your Current Organism:
Alteromonadaceae bacterium Bs31
NCBI taxonomy Id: 1304903
Other names: A. bacterium Bs31
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