STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF38489.1TonB-dependent receptor. (1077 aa)    
Predicted Functional Partners:
SMF38493.1
Cellulase (glycosyl hydrolase family 5).
 
     0.894
SMF56917.1
Hypothetical protein.
  
     0.760
SMF01025.1
Outer membrane protein.
  
     0.744
SMF33624.1
SapC protein.
  
     0.687
SMF17418.1
Iron complex outermembrane recepter protein.
  
 
  0.681
SMF48183.1
AraC-type DNA-binding protein.
  
     0.673
SMF24957.1
Pectin methylesterase.
  
     0.668
SMF25104.1
SapC protein.
  
     0.654
SMF09044.1
Tryptophan halogenase.
 
     0.644
SMF27399.1
Tryptophan halogenase.
  
     0.642
Your Current Organism:
Alteromonadaceae bacterium Bs31
NCBI taxonomy Id: 1304903
Other names: A. bacterium Bs31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.