STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF51179.1RND family efflux transporter, MFP subunit. (278 aa)    
Predicted Functional Partners:
SMF51185.1
Membrane-fusion protein.
 
  
  0.906
SMF51181.1
Putative peptide zinc metalloprotease protein.
 
  
  0.902
SMF62449.1
Outer membrane protein.
 
 0.879
SMF62300.1
Outer membrane protein, adhesin transport system.
 
 0.839
SMF62289.1
ATP-binding cassette, subfamily C, LapB.
 
 0.799
SMF02708.1
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
 0.754
SMF51177.1
Cadherin-like.
 
  
  0.649
SMF48300.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.647
SMF18069.1
Duplicated orphan permease.
 
 
  0.630
SMF24919.1
Putative ABC transport system permease protein.
 
 
  0.613
Your Current Organism:
Alteromonadaceae bacterium Bs31
NCBI taxonomy Id: 1304903
Other names: A. bacterium Bs31
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