SMF54804.1 protein (Alteromonadaceae bacterium Bs31)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMF54804.1

Diguanylate cyclase (GGDEF) domain-containing protein. (440 aa)

Predicted Functional Partners:

SMF46969.1

0.956

SMF14744.1

0.942

SMF23243.1

0.896

SMF28877.1

0.867

SMF00956.1

0.834

SMF63145.1

0.812

SMF20263.1

0.787

SMF11609.1

0.757

SMF35931.1

0.753

SMF08421.1

0.750

Your Current Organism:

Alteromonadaceae bacterium Bs31

NCBI taxonomy Id: 1304903
Other names: A. bacterium Bs31

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMF00956.1	SMF08421.1	SAMN02745866_00086	SAMN02745866_00620	Diguanylate cyclase (GGDEF) domain-containing protein.	Signal transduction histidine kinase.	0.966
SMF00956.1	SMF11609.1	SAMN02745866_00086	SAMN02745866_00732	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.938
SMF00956.1	SMF14744.1	SAMN02745866_00086	SAMN02745866_00956	Diguanylate cyclase (GGDEF) domain-containing protein.	Signal transduction histidine kinase.	0.998
SMF00956.1	SMF20263.1	SAMN02745866_00086	SAMN02745866_01261	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.968
SMF00956.1	SMF23243.1	SAMN02745866_00086	SAMN02745866_01490	Diguanylate cyclase (GGDEF) domain-containing protein.	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).	0.747
SMF00956.1	SMF28877.1	SAMN02745866_00086	SAMN02745866_01859	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.992
SMF00956.1	SMF35931.1	SAMN02745866_00086	SAMN02745866_02285	Diguanylate cyclase (GGDEF) domain-containing protein.	Two-component system, NarL family, sensor histidine kinase BarA.	0.963
SMF00956.1	SMF46969.1	SAMN02745866_00086	SAMN02745866_03013	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.995
SMF00956.1	SMF54804.1	SAMN02745866_00086	SAMN02745866_03497	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.834
SMF00956.1	SMF63145.1	SAMN02745866_00086	SAMN02745866_04072	Diguanylate cyclase (GGDEF) domain-containing protein.	GAF sensor signal transduction histidine kinase.	0.875
SMF08421.1	SMF00956.1	SAMN02745866_00620	SAMN02745866_00086	Signal transduction histidine kinase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.966
SMF08421.1	SMF11609.1	SAMN02745866_00620	SAMN02745866_00732	Signal transduction histidine kinase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.994
SMF08421.1	SMF14744.1	SAMN02745866_00620	SAMN02745866_00956	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SMF08421.1	SMF20263.1	SAMN02745866_00620	SAMN02745866_01261	Signal transduction histidine kinase.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.984
SMF08421.1	SMF23243.1	SAMN02745866_00620	SAMN02745866_01490	Signal transduction histidine kinase.	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).	0.964
SMF08421.1	SMF28877.1	SAMN02745866_00620	SAMN02745866_01859	Signal transduction histidine kinase.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.998
SMF08421.1	SMF35931.1	SAMN02745866_00620	SAMN02745866_02285	Signal transduction histidine kinase.	Two-component system, NarL family, sensor histidine kinase BarA.	0.996
SMF08421.1	SMF46969.1	SAMN02745866_00620	SAMN02745866_03013	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.998
SMF08421.1	SMF54804.1	SAMN02745866_00620	SAMN02745866_03497	Signal transduction histidine kinase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.750
SMF08421.1	SMF63145.1	SAMN02745866_00620	SAMN02745866_04072	Signal transduction histidine kinase.	GAF sensor signal transduction histidine kinase.	0.979