STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF56483.1YKOF-related Family. (83 aa)    
Predicted Functional Partners:
SMF56469.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.941
SMF56492.1
Nicotinamide mononucleotide transporter.
 
     0.918
SMF56499.1
Thiamine kinase.
 
     0.813
SMF64312.1
Outer membrane protein.
  
     0.727
SMF54964.1
Tetratricopeptide repeat-containing protein.
  
     0.694
SMF52705.1
TonB family C-terminal domain-containing protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.685
SMF05765.1
TIGR03545 family protein.
  
     0.676
SMF25055.1
Hypothetical protein.
  
     0.640
SMF03502.1
Outer membrane protein (porin).
  
     0.635
SMF54971.1
Outer membrane transport energization protein TonB (TC 2.C.1.1.1).
  
     0.629
Your Current Organism:
Alteromonadaceae bacterium Bs31
NCBI taxonomy Id: 1304903
Other names: A. bacterium Bs31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.