Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SMF06486.1 | SMF28720.1 | SAMN02745866_00502 | SAMN02745866_01845 | Helicase conserved C-terminal domain-containing protein. | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.669 |
| SMF06486.1 | SMF28725.1 | SAMN02745866_00502 | SAMN02745866_01846 | Helicase conserved C-terminal domain-containing protein. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. | 0.973 |
| SMF06486.1 | SMF58207.1 | SAMN02745866_00502 | SAMN02745866_03772 | Helicase conserved C-terminal domain-containing protein. | Fe-S cluster assembly protein SufA; Belongs to the HesB/IscA family. | 0.550 |
| SMF06486.1 | SMF58235.1 | SAMN02745866_00502 | SAMN02745866_03778 | Helicase conserved C-terminal domain-containing protein. | Transcriptional regulator, BadM/Rrf2 family; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins. | 0.748 |
| SMF06486.1 | djlA | SAMN02745866_00502 | SAMN02745866_02623 | Helicase conserved C-terminal domain-containing protein. | DnaJ like chaperone protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.954 |
| SMF06486.1 | iscS | SAMN02745866_00502 | SAMN02745866_03777 | Helicase conserved C-terminal domain-containing protein. | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.973 |
| SMF06486.1 | nfuA | SAMN02745866_00502 | SAMN02745866_02490 | Helicase conserved C-terminal domain-containing protein. | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.922 |
| SMF27859.1 | SMF28720.1 | SAMN02745866_01778 | SAMN02745866_01845 | Nitrogen fixation protein NifQ. | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.801 |
| SMF27859.1 | SMF28725.1 | SAMN02745866_01778 | SAMN02745866_01846 | Nitrogen fixation protein NifQ. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. | 0.978 |
| SMF27859.1 | SMF58207.1 | SAMN02745866_01778 | SAMN02745866_03772 | Nitrogen fixation protein NifQ. | Fe-S cluster assembly protein SufA; Belongs to the HesB/IscA family. | 0.550 |
| SMF27859.1 | SMF58235.1 | SAMN02745866_01778 | SAMN02745866_03778 | Nitrogen fixation protein NifQ. | Transcriptional regulator, BadM/Rrf2 family; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins. | 0.748 |
| SMF27859.1 | djlA | SAMN02745866_01778 | SAMN02745866_02623 | Nitrogen fixation protein NifQ. | DnaJ like chaperone protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.954 |
| SMF27859.1 | iscS | SAMN02745866_01778 | SAMN02745866_03777 | Nitrogen fixation protein NifQ. | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.973 |
| SMF27859.1 | nfuA | SAMN02745866_01778 | SAMN02745866_02490 | Nitrogen fixation protein NifQ. | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.922 |
| SMF28720.1 | SMF06486.1 | SAMN02745866_01845 | SAMN02745866_00502 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Helicase conserved C-terminal domain-containing protein. | 0.669 |
| SMF28720.1 | SMF27859.1 | SAMN02745866_01845 | SAMN02745866_01778 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Nitrogen fixation protein NifQ. | 0.801 |
| SMF28720.1 | SMF28725.1 | SAMN02745866_01845 | SAMN02745866_01846 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. | 0.999 |
| SMF28720.1 | SMF58207.1 | SAMN02745866_01845 | SAMN02745866_03772 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Fe-S cluster assembly protein SufA; Belongs to the HesB/IscA family. | 0.955 |
| SMF28720.1 | SMF58235.1 | SAMN02745866_01845 | SAMN02745866_03778 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Transcriptional regulator, BadM/Rrf2 family; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins. | 0.958 |
| SMF28720.1 | djlA | SAMN02745866_01845 | SAMN02745866_02623 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | DnaJ like chaperone protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.985 |
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